Is the latest version of the tool expected to run at both clusters? Seems to only work at Jetstream2?
toolshed.g2.bx.psu.edu/repos/galaxyp/msconvert/msconvert/3.0.20287.7
Success
| Runner |
jetstream2 |
| Runner Job ID |
76804294 |
| Handler |
handler2 |
| default_file_action |
remote_transfer |
| dependency_resolution |
local |
| jobs_directory |
/jetstream2/scratch/main/jobs |
| outputs_to_working_directory |
false |
| remote_metadata |
true |
| remote_property_galaxy_home |
/cvmfs/main.galaxyproject.org/galaxy |
| rewrite_parameters |
true |
| singularity_default_container_id |
/cvmfs/singularity.galaxyproject.org/all/python:3.8.3 |
| singularity_enabled |
true |
| singularity_no_mount |
|
| singularity_volumes |
$galaxy_root:ro,$tool_directory:ro,$working_directory:rw,$job_directory:rw,/cvmfs/data.galaxyproject.org:ro,/cvmfs/brc.galaxyproject.org:ro,/cvmfs/vgp.galaxyproject.org:ro,/cvmfs/main.galaxyproject.org:ro,/dev/shm:rw,/tmp/slurm_job_$SLURM_JOB_ID:rw |
| submit_native_specification |
--nodes=1 --ntasks=1 --mem=3788 --time=36:00:00 --partition=tpv |
| tmp_dir |
true |
| transport |
curl |
| transport_timeout |
300 |
Fail
| Runner |
slurm |
| Runner Job ID |
9258498 |
| Handler |
handler3 |
| metadata_strategy |
extended |
| native_specification |
--nodes=1 --ntasks=1 --mem=3789 --time=36:00:00 --partition=normal |
| outputs_to_working_directory |
true |
| singularity_default_container_id |
/cvmfs/singularity.galaxyproject.org/all/python:3.8.3 |
| singularity_enabled |
true |
| singularity_no_mount |
|
| singularity_volumes |
$galaxy_root:ro,$tool_directory:ro,$working_directory:rw,$job_directory:rw,/corral4/main/object_store_cache:ro,/corral4/main/objects:ro,/corral4/main/files:ro,/corral4/main/psufiles:ro,/corral4/data:ro,/cvmfs/data.galaxyproject.org:ro,/cvmfs/brc.galaxyproject.org:ro,/cvmfs/vgp.galaxyproject.org:ro,/cvmfs/main.galaxyproject.org:ro |
| tmp_dir |
true |
Is the latest version of the tool expected to run at both clusters? Seems to only work at Jetstream2?
toolshed.g2.bx.psu.edu/repos/galaxyp/msconvert/msconvert/3.0.20287.7
Success
Fail