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Suspected configuration issue with msconvert 3.0.20287.7 #1485

Description

@jennaj

Is the latest version of the tool expected to run at both clusters? Seems to only work at Jetstream2?
toolshed.g2.bx.psu.edu/repos/galaxyp/msconvert/msconvert/3.0.20287.7

Success

Runner jetstream2
Runner Job ID 76804294
Handler handler2
default_file_action remote_transfer
dependency_resolution local
jobs_directory /jetstream2/scratch/main/jobs
outputs_to_working_directory false
remote_metadata true
remote_property_galaxy_home /cvmfs/main.galaxyproject.org/galaxy
rewrite_parameters true
singularity_default_container_id /cvmfs/singularity.galaxyproject.org/all/python:3.8.3
singularity_enabled true
singularity_no_mount  
singularity_volumes $galaxy_root:ro,$tool_directory:ro,$working_directory:rw,$job_directory:rw,/cvmfs/data.galaxyproject.org:ro,/cvmfs/brc.galaxyproject.org:ro,/cvmfs/vgp.galaxyproject.org:ro,/cvmfs/main.galaxyproject.org:ro,/dev/shm:rw,/tmp/slurm_job_$SLURM_JOB_ID:rw
submit_native_specification --nodes=1 --ntasks=1 --mem=3788 --time=36:00:00 --partition=tpv
tmp_dir true
transport curl
transport_timeout 300

Fail

Runner slurm
Runner Job ID 9258498
Handler handler3
metadata_strategy extended
native_specification --nodes=1 --ntasks=1 --mem=3789 --time=36:00:00 --partition=normal
outputs_to_working_directory true
singularity_default_container_id /cvmfs/singularity.galaxyproject.org/all/python:3.8.3
singularity_enabled true
singularity_no_mount  
singularity_volumes $galaxy_root:ro,$tool_directory:ro,$working_directory:rw,$job_directory:rw,/corral4/main/object_store_cache:ro,/corral4/main/objects:ro,/corral4/main/files:ro,/corral4/main/psufiles:ro,/corral4/data:ro,/cvmfs/data.galaxyproject.org:ro,/cvmfs/brc.galaxyproject.org:ro,/cvmfs/vgp.galaxyproject.org:ro,/cvmfs/main.galaxyproject.org:ro
tmp_dir true

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