anat2vessels/pyproject.toml at main · nrdg/anat2vessels · GitHub

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[build-system]
requires = ["setuptools >= 64", "wheel", "setuptools_scm[toml] >= 7"]
build-backend = "setuptools.build_meta"

[project]
name = "anat2vessels"
dynamic = ["version"]
description = "Quantifying brain vascular morphology in anatomical MR images using deep learning"
readme = "README.md"
license = {text = "BSD License"}
requires-python = ">=3.11"
authors = [
    {name = "Asa Gilmore"},
    {name = "Ariel Rokem"}
]
classifiers = [
    "Development Status :: 3 - Alpha",
    "Environment :: Console",
    "Intended Audience :: Science/Research",
    "License :: OSI Approved :: BSD License",
    "Operating System :: OS Independent",
    "Programming Language :: Python",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.12",
    "Programming Language :: Python :: 3.13",
    "Topic :: Scientific/Engineering",
]
dependencies = [
    "nibabel >= 5",
    "numpy >= 1.22",
    "scipy >= 1.10",
    "scikit-image >= 0.19",
    "tqdm >= 4",
    "pandas >= 1.5",
    "ray >= 2.6",
    "antspyx",
    "antspynet",
    "pooch >= 1",
    "pybids >= 0.17",
]

[project.optional-dependencies]
dev = [
    "spin == 0.13",
    "setuptools_scm[toml] == 7",
]
doc = [
    "matplotlib",
    "numpydoc",
    "pydata-sphinx-theme >= 0.16.1",
    "sphinx >= 8.2.0",
    "sphinx-autoapi >= 3.4.0",
    "sphinx-design",
    "sphinx-gallery",
]
style = [
    "codespell",
    "pre-commit",
    "ruff",
]
test = [
    "pytest >= 7",
    "pytest-console-scripts >= 0",
    "pytest-cov",
]
all = [
    "anat2vessels[dev]",
    "anat2vessels[doc]",
    "anat2vessels[style]",
    "anat2vessels[test]",
]
[project.scripts]
a2v-preprocess = "anat2vessels.preprocess:run"
a2v-features = "anat2vessels.vessels2csv:run"

[project.urls]
Homepage = "https://github.com/nrdg/anat2vessels"
Documentation = "https://nrdg.github.io/anat2vessels/"
Repository = "https://github.com/nrdg/anat2vessels"

[tool.setuptools.packages.find]
where = ["src"]
include = ["anat2vessels*"]

[tool.setuptools_scm]
write_to = "src/anat2vessels/version.py"
fallback_version = "0.0"
local_scheme = "no-local-version"

[tool.pytest.ini_options]
script_launch_mode = "subprocess"

[tool.codespell]
ignore-words-list = "astroid"

[tool.spin]
package = "anat2vessels"

[tool.spin.commands]
"Setup" = [".spin/cmds.py:setup"]
"Build" = ["spin.cmds.pip.install"]
"Test" = [".spin/cmds.py:test", ".spin/cmds.py:lint"]
"Docs" = [".spin/cmds.py:docs"]
"Clean" = [".spin/cmds.py:clean"]