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    112 repositories

    • c302

      Public
      The c302 framework for generating multiscale network models of C. elegans
      simulationopenworm
      simulationopenworm
      Python
      •
      MIT License
      •37•149•8•0•Updated Aug 1, 2026Aug 1, 2026

    • openworm.github.io

      Public
      OpenWorm main website
      HTML
      •35•29•15•1•Updated Jul 31, 2026Jul 31, 2026

    • sibernetic

      Public
      This is a C++/OpenCL implementation of the PCISPH algorithm supplemented with a set of biomechanics related features applied to C. elegans locomotion
      C
      •
      Other
      •115•391•33•10•Updated Jul 31, 2026Jul 31, 2026

    • openworm_docs

      Public
      Documentation for OpenWorm, i.e. docs.openworm.org
      Python
      •26•44•13•5•Updated Jul 31, 2026Jul 31, 2026

    • MultipleNetworkOscillator

      Public
      Code and data for manuscript submitted to eLife. The model provides a theoretical demonstration that multiple network oscillators in the ventral nerve cord are …
      C++
      •1•0•0•0•Updated Jul 29, 2026Jul 29, 2026

    • CE_locomotion

      Public
      Neuromechanical model of locomotion in C. elegans, originally developed by Eduardo Izquerdo, Erick Olivares and Randall Beer
      C++
      •6•4•7•1•Updated Jul 29, 2026Jul 29, 2026

    • CelegansProteinExtractionPipeline

      Public
      This is a repository dedicated to my OW studentship project
      Jupyter Notebook
      •2•0•0•0•Updated Jul 29, 2026Jul 29, 2026

    • OpenWorm

      Public
      Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues
      simulationbiologyopenworm
      simulationbiologyopenwormelegans
      Python
      •
      MIT License
      •243•3k•41•1•Updated Jul 24, 2026Jul 24, 2026

    • ConnectomeToolbox

      Public
      Information on published connectomics data related to C. elegans
      Python
      •
      MIT License
      •7•7•4•1•Updated Jul 17, 2026Jul 17, 2026

    • org.geppetto.datasources

      Public
      Java
      •
      Other
      •2•2•0•5•Updated Jul 16, 2026Jul 16, 2026

    • org.geppetto.core

      Public
      Geppetto core bundle
      Java
      •
      Other
      •10•22•6•7•Updated Jul 16, 2026Jul 16, 2026

    • org.geppetto.simulation

      Public
      Generic simulation bundle for Geppetto
      Java
      •
      Other
      •10•9•2•4•Updated Jul 14, 2026Jul 14, 2026

    • org.geppetto.frontend

      Public
      Geppetto Java frontend bundle
      Java
      •
      Other
      •24•30•2•4•Updated Jul 14, 2026Jul 14, 2026

    • geppetto-client

      Public
      The web client of a Geppetto application
      JavaScript
      •
      Other
      •2•6•70•27•Updated Jul 14, 2026Jul 14, 2026

    • Worm3DViewer

      Public
      Test repository for multiple views of the worm in 3D
      Python
      •0•0•0•1•Updated Jul 14, 2026Jul 14, 2026

    • WCONViewer

      Public
      Python based viewer for WCON files in 2D
      Python
      •
      MIT License
      •0•0•0•0•Updated Jul 13, 2026Jul 13, 2026

    • NicolettiEtAl2024_MN_IN

      Public
      C.elegans motor and interneurons (Nicoletti at al. 2024)
      Python
      •4•0•4•3•Updated Jul 2, 2026Jul 2, 2026

    • Worm2D

      Public
      Simulator of 2D worm body models
      C++
      •
      MIT License
      •0•1•0•0•Updated Jun 29, 2026Jun 29, 2026

    • wormneuroatlas

      Public
      Neural signal propagation atlas (Randi et al.), genome (WormBase), single-cell transcriptome (Taylor et al.), neuropeptide/GPCR deorphanization (Beets et al.), …
      Python
      •
      GNU General Public License v3.0
      •8•2•0•0•Updated Jun 22, 2026Jun 22, 2026

    • tracker-commons

      Public
      Compilation of information and code bases related to open-source trackers for C. elegans
      Scala
      •13•14•28•3•Updated Apr 30, 2026Apr 30, 2026

    • open-worm-analysis-toolbox

      Public
      A testing pipeline that allows us to run a behavioural phenotyping of our virtual worm running the same test statistics the Schafer Lab used on their worm data.
      Python
      •
      Other
      •26•48•27•1•Updated Apr 28, 2026Apr 28, 2026

    • ai-contributor-registry

      Public
      Registry of AI agents contributing to OpenWorm (per DD015 AI-Native Contributor Model)
      0•0•0•0•Updated Apr 17, 2026Apr 17, 2026

    • openworm.ai

      Public
      Scripts related to use of LLMs and other AI technology in OpenWorm
      HTML
      •
      MIT License
      •3•4•2•0•Updated Apr 14, 2026Apr 14, 2026

    • hodgkin_huxley_tutorial

      Public
      A repository containing code for a number of tutorials on the Hodgkin Huxley model, including an interactive Jupyter notebook
      Python
      •
      GNU Lesser General Public License v3.0
      •10•51•6•0•Updated Apr 13, 2026Apr 13, 2026

    • NicolettiEtAl2019_NeuronModels

      Public
      Biophysical models of AWCon and RMD C. elegans neurons (M. Nicoletti at al. 2019)
      Jupyter Notebook
      •2•1•2•0•Updated Mar 26, 2026Mar 26, 2026

    • Blender2NeuroML

      Public
      Conversion script to bring neuron models created in Blender into NeuroML format
      Python
      •
      MIT License
      •5•17•2•0•Updated Feb 17, 2026Feb 17, 2026

    • wormbrowser

      Public
      The Worm Browser -- a 3D browser of the cellular anatomy of the c. elegans
      JavaScript
      •
      Other
      •12•50•1•1•Updated Feb 13, 2026Feb 13, 2026

    • openwormbrowser-ios

      Public
      OpenWorm Browser for iOS, based on the open-3d-viewer, which was based on Google Body Browser
      Objective-C
      •
      Other
      •14•20•3•2•Updated Jan 20, 2026Jan 20, 2026

    • WormWorx

      Public
      C. elegans simulator
      C
      •3•7•1•0•Updated Sep 5, 2025Sep 5, 2025

    • CelegansNeuromechanicalGaitModulation

      Public
      C elegans Neuromechanical Gait Modulation Model
      C
      •6•1•0•0•Updated Aug 1, 2025Aug 1, 2025
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