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refactor: pair exclude_types as canonical NeighborGraph transform; dpa1 graph path supports exclude_types (decision #18)#5733

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wanghan-iapcm:feat-graph-pair-exclude
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refactor: pair exclude_types as canonical NeighborGraph transform; dpa1 graph path supports exclude_types (decision #18)#5733
wanghan-iapcm wants to merge 51 commits into
deepmodeling:masterfrom
wanghan-iapcm:feat-graph-pair-exclude

docs: numpydoc-align docstrings added in this PR

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Codecov / codecov/project succeeded Jul 9, 2026 in 1s

79.52% (-0.11%) compared to 0acd0e5

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79.52% (-0.11%) compared to 0acd0e5

Details

Codecov Report

❌ Patch coverage is 89.72810% with 34 lines in your changes missing coverage. Please review.
✅ Project coverage is 79.52%. Comparing base (0acd0e5) to head (9f9da9c).

Files with missing lines Patch % Lines
.../api_cc/tests/test_deeppot_dpa1_pairexcl_ptexpt.cc 79.31% 12 Missing ⚠️
deepmd/pt_expt/utils/nv_graph_builder.py 0.00% 5 Missing ⚠️
deepmd/jax/jax2tf/make_model.py 20.00% 4 Missing ⚠️
deepmd/pt/utils/nv_nlist.py 40.00% 3 Missing ⚠️
source/api_cc/src/DeepPotPTExpt.cc 88.46% 0 Missing and 3 partials ⚠️
deepmd/jax/model/hlo.py 77.77% 2 Missing ⚠️
deepmd/pt_expt/model/make_model.py 60.00% 2 Missing ⚠️
deepmd/pt_expt/infer/deep_eval.py 94.44% 1 Missing ⚠️
deepmd/tf2/make_model.py 50.00% 1 Missing ⚠️
source/api_cc/include/commonPT.h 97.50% 0 Missing and 1 partial ⚠️
Additional details and impacted files 
@@            Coverage Diff             @@
##           master    #5733      +/-   ##
==========================================
- Coverage   79.62%   79.52%   -0.11%     
==========================================
  Files        1014     1015       +1     
  Lines      115533   115818     +285     
  Branches     4276     4291      +15     
==========================================
+ Hits        91995    92102     +107     
- Misses      21994    22164     +170     
- Partials     1544     1552       +8

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