sbx2imagej: load sbx files directly to imagej/fiji

sbx2imagej, is a wrapper between sbxreader and pyimagej, sbxreader takes care of loading sbx files and pyimagej takes care of showing them in imagej.

Usage

open console and write:

sbx2imagej

Installation

sbx2imagej depends on pyimagej, and installing pyimagej is a bit hard as it require non-Python dependencies OpenJDK and Maven. The easiest method it to install pyimagej with conda and then installing sbx2image with pip:

conda install -c conda-forge pyimagej openjdk=8
pip install sbx2imagej

read more about pyimagej installation

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Note! First time loading an sbx file to imagej will take a couple of minutes to set up pyimagej enviorment.