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@Computational-Genomics-BSC Computational Genomics (BSC-CNS)

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    6 repositories

    • GenomeAnonymizer

      Public
      Java
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 31, 2026Mar 31, 2026

    • germline-variant-callers

      Public
      Scripts and containers to run germline variant callers
      Shell
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Jan 29, 2026Jan 29, 2026

    • somatic-variant-callers

      Public
      Scripts and containers to run somatic variant callers
      Shell
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Jan 29, 2026Jan 29, 2026

    • GenomeVariator

      Public
      Tool for adding genomic variants to an existing genome (in SAM/BAM/CRAM format). Currently supported variants are SNVs, indels and SVs (insertions, deletions, t…
      genomicssamvcf
      genomicssamvcfbamcramtumorized
      Python
      •
      Other
      •1•1•0•0•Updated Nov 4, 2025Nov 4, 2025

    • plink-bed-reader

      Public
      Lightweight and memory efficient reader for PLINK BED files. It supports both SNP-major and individual-major formats. Written in Python.
      bioinformaticsgeneticsplink
      bioinformaticsgeneticsplinkbedvariantsnvgenotypeindel
      Python
      •
      MIT License
      •0•2•0•0•Updated Feb 21, 2025Feb 21, 2025

    • GenomeMosaicMaker

      Public
      Tool for copying read-alignments regions centered around variants (in VCF/VCF.GZ/BCF format) from existing genomes (in SAM/BAM/CRAM format) to concat them into …
      genomicssamvcf
      genomicssamvcfbammosaiccram
      Python
      •
      Other
      •1•1•0•0•Updated Sep 12, 2024Sep 12, 2024
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