Python tools for short-term forecasting
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Jul 13, 2026 - Python
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infectious-disease-modeling
Here are 16 public repositories matching this topic...
A curated list of awesome resources for infectious disease modeling.
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Jul 12, 2026
Comprehensive collection of 8 clinical data science and health analytics projects focusing on disease prediction, risk stratification, and treatment pattern analysis using advanced machine learning algorithms and statistical modeling. Portfolio: https://nana-safo-duker.github.io/
python data-science machine-learning bioinformatics r jupyter-notebooks predictive-analytics medical-informatics precision-medicine cancer-detection health-analytics disease-prediction diabetes-prediction clinical-data-science cardiovascular-disease healthcare-ai infectious-disease-modeling treatment-adherence
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Jun 21, 2026 - Jupyter Notebook
Locally-hosted web application for visualization of hubverse formatted observations and model forecasts and for annotation of data and models.
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Jul 13, 2026 - Python
Materials for the in-person "Modelling for Pandemic Preparedness and Response" Modular Shortcourse
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Sep 1, 2025
A program to visualise simulations of an infectious disease spreading through a procedurally generated basic town.
visualization python procedural-generation simulation pygame epidemiology infection infectious-diseases sir-model infectious-disease-models epidemic-simulations coronavirus covid-19 seird-model infection-simulation infectious-disease-modeling
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May 15, 2026 - Python
Calibration tools for agent-based epidemiological models built with epiworldR
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Apr 2, 2026 - R
Python codes used for analyzing large datasets for machine learning, statistics, data cleaning and structuring, visualizations, etc.
machine-learning bioinformatics statistics genomics modeling machine-learning-algorithms epidemiology molecular-biology bioinformatics-scripts infectious-diseases antibiotic-resistance epidemiology-analysis epidemiology-models infectious-disease-modeling
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Jun 23, 2025 - Python
A replication in Python and PyRenew of a renewal model written in Epidemia for forecasting influenza hospital admissions.
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Jul 13, 2026 - Python
Using OPTICS clustering to group US states by Covid-19 trends in hospitalizations and other metrics.
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Jun 2, 2021 - Python
AI/ML epidemiology portfolio for infectious disease outbreak forecasting, surveillance modeling, and reproducible public health analytics.
machine-learning epidemiology malaria explainable-ai bayesian-modeling spatiotemporal-modeling infectious-disease-modeling public-health-ai outbreak-forecasting respiratory-surveillance
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Jun 21, 2026 - Python
This repository contains codes developed in 2022 to simulate the proposed Mobile Human Ad Hoc Network model to simulate the infectious disease spread based on airborne transmission.
epidemiology mobile-networks sir-model levy-walks molecular-communication infectious-disease-modeling truncated-levy-walk airborne-transmission
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Sep 20, 2024 - MATLAB
A TabNet-based, Bayesian-optimized pipeline for predicting typhoid fever diagnosis from Bangladeshi clinical biomarker data.
python machine-learning machine-learning-algorithms epidemiology bangladesh bayesian-optimization infectious-diseases infectious-disease-models tabnet infectious-disease-modeling typhoid-fever
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Dec 31, 2025 - Jupyter Notebook
Plans to be run by Cursor AI plan agents to build a project to start a learning journey about the epidemiology and modeling approaches of an infectious disease
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Apr 4, 2026
Integrative network modelling of patient movement pathways
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Jun 5, 2026 - R
Deterministic compartmental models (IR & SIR) for infectious disease dynamics in R from evidence synthesis to vaccination threshold analysis using deSolve & tidyverse.
ggplot2 simulation tidyverse data-visualization r-markdown public-health epidemiology differential-equations r-programming vaccination mathematical-modeling sir-model compartmental-models desolve infectious-disease-modeling outbreak-modeling
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Jul 1, 2026
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