Git-based antigen specificity database storage & management.
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Updated
Jun 11, 2026 - Python
Git-based antigen specificity database storage & management.
A script that computationally designs a vaccine
HTTP Reception / Interception Service created for internal use at Pagero AB, then open-sourced for the community.
Olfactory Receptor family Assigner (bioperl module)
Tool for directed evolution of protein receptors specifically for a ligand of interest ; implementation and fine-tuning of @zaixizhang 's PocketGen focused on maximizing binding affinity.
tracking polymerization processes across a membrane through TIRF experiment data
Companion scripts for DMS data processing, dose-response curve fitting and figure reproduction ("The genetic architecture of an allosteric hormone receptor", Stammnitz & Lehner, biorXiv 2025)
Companion scripts for DMS data processing, dose-response curve fitting and figure reproduction (Stammnitz & Lehner, biorXiv 2025)
GNU Radio block for AD-FMCOMMS1-EBZ
V. M. Gumerov, E. P. Andrianova, M. A. Matilla, Karen M. Page, Elizabet Monteagudo-Cascales, A. C. Dolphin, T. Krell, I. B. Zhulin (2022). Amino acid sensor conserved from bacteria to humans.
Enhance image resilience against diffusion-based edits with DiffVax, an optimization-free method designed for robust image immunization.
*Cerna-Vargas J-P., *Gumerov V.M., Krell T., Zhulin I.B. (2023) Amine recognizing domain in diverse receptors from bacteria and archaea evolved from the universal amino acid sensor. PNAS, 120, e2305837120
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