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SMD Bioinformatics Lund

Bioinformatic team at Section for Molecular Diagnostics, Laboratory Services, Region Skåne, Lund

17 followers
Sweden

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gens gens Public

TypeScript 19 9
nextflow_wgs nextflow_wgs Public

Nextflow 10 6
nextflow_microwgs nextflow_microwgs Public

Perl 2 1
nextflow_tumwgs nextflow_tumwgs Public

Perl 2 2
SomaticPanelPipeline SomaticPanelPipeline Public

Nextflow 1 2

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Showing 10 of 71 repositories

bonsai Public
Visualize and analyze resistance and outbreak of bacterial pathogen

SMD-Bioinformatics-Lund/bonsai's past year of commit activity

Python 8 GPL-3.0 3 38 7 Updated Jul 24, 2026
nextflow_tumwgs Public

SMD-Bioinformatics-Lund/nextflow_tumwgs's past year of commit activity

Perl 2 2 16 0 Updated Jul 23, 2026
coyote3 Public
Coyote3 is a secure, scalable, and extensible web application designed as a one-stop solution for genomic variant interpretation, data management, and clinical reporting. Built by the @SMD-Bioinformatics-Lund, Lund,

SMD-Bioinformatics-Lund/coyote3's past year of commit activity

Python 0 2 49 (2 issues need help) 4 Updated Jul 21, 2026
virtitta Public
Visualization of virus, designed to work with Virpipa

SMD-Bioinformatics-Lund/virtitta's past year of commit activity

Python 0 MPL-2.0 0 0 0 Updated Jul 20, 2026
SomaticPanelPipeline Public

SMD-Bioinformatics-Lund/SomaticPanelPipeline's past year of commit activity

Nextflow 1 2 28 (1 issue needs help) 3 Updated Jul 17, 2026
bonsai-sdk Public
bonsai-libs is the shared Python library for the Bonsai platform. It provides common building blocks used by Bonsai services and tools.

SMD-Bioinformatics-Lund/bonsai-sdk's past year of commit activity

Python 1 GPL-3.0 0 0 2 Updated Jul 10, 2026
bonsai-prp Public
Pipeline output Processing Program for Bonsai

SMD-Bioinformatics-Lund/bonsai-prp's past year of commit activity

Python 0 GPL-3.0 2 10 2 Updated Jul 9, 2026
jasentool Public
Helper tool for all of jasen's needs

SMD-Bioinformatics-Lund/jasentool's past year of commit activity

Python 0 GPL-3.0 0 5 1 Updated Jul 9, 2026
cll_genie Public
CLL Genie is a web application for managing LymphoTrack data, IMGT/V-QUEST analysis, IGHV mutation assessment, and clinical CLL reporting.

SMD-Bioinformatics-Lund/cll_genie's past year of commit activity

Python 1 0 4 0 Updated Jul 8, 2026
PGxModule Public
PGxModule is an advanced Nextflow DSL2 workflow, designed to seamlessly integrate into your genomics pipeline. It empowers you to generate sample-specific reports with clinical guidelines, leveraging state-of-the-art variant detection in Genomic Medicine Sweden sequencing panels.

SMD-Bioinformatics-Lund/PGxModule's past year of commit activity

Nextflow 1 GPL-3.0 0 7 (1 issue needs help) 0 Updated Jul 6, 2026

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