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LOD of 5% VAF
enhancementNew feature or requestNew feature or requestStatus: Open.#46 In SMD-Bioinformatics-Lund/nextflow_tumwgs;CEBPA as both somatic and constitutional
bugSomething isn't workingSomething isn't workingStatus: Open.#45 In SMD-Bioinformatics-Lund/nextflow_tumwgs;Automated Classification and Scoring for High Hyperdiploidy (HeH) in B-ALL
enhancementNew feature or requestNew feature or requestStatus: Open.#44 In SMD-Bioinformatics-Lund/nextflow_tumwgs;Implement Targeted Local Re-alignment and Assembly for Complex Regions (DUX4, inv(3)/MECOM
enhancementNew feature or requestNew feature or requestStatus: Open.#43 In SMD-Bioinformatics-Lund/nextflow_tumwgs;Under-calling of X chromosome genomic variation (ex. PAR1 Deletions and P2RY8::CRLF2 Fusions) due to Sex Chromosome Hemizygosity
bugSomething isn't workingSomething isn't workingStatus: Open.#42 In SMD-Bioinformatics-Lund/nextflow_tumwgs;- Status: Open.#41 In SMD-Bioinformatics-Lund/nextflow_tumwgs;
Pairdness and contamination to CDM TUMWGS
enhancementNew feature or requestNew feature or requestStatus: Open.#40 In SMD-Bioinformatics-Lund/nextflow_tumwgs;- Status: Open.#38 In SMD-Bioinformatics-Lund/nextflow_tumwgs;
CEBPA gene requires the germline variants to be passed and shown
enhancementNew feature or requestNew feature or requestStatus: Open.#37 In SMD-Bioinformatics-Lund/nextflow_tumwgs;Gene-Level Coverage and Contamination Quality Reporting
enhancementNew feature or requestNew feature or requestStatus: Open.#36 In SMD-Bioinformatics-Lund/nextflow_tumwgs;Documentation
documentationImprovements or additions to documentationImprovements or additions to documentationStatus: Open.#16 In SMD-Bioinformatics-Lund/nextflow_tumwgs;make it compatibile wtih tumor only analysis
enhancementNew feature or requestNew feature or requestStatus: Open.#15 In SMD-Bioinformatics-Lund/nextflow_tumwgs;